I just realized you are 'Duke of Metal' LOL. I thought you were new here
Just a few other observations or ideas.
Number 1 - I don't think the hum is all that bad. I mean my QR hums like that as I think most amps do. When you were switching it on and off it reminded me of switching a Noise Gate on and off.
Also, this isn't really Nitro specific so to get more feedback, maybe post this in the main forum where you will get more eyes (or ears) on it.
So this is the second loop now? The first one did the same thing? And Scott deemed it defective? Or did he just send it to you try out? Was that under warranty? Did you do the work yourself? I am assuming the loop circuit has a ground connection/connector?
I'm not an amp tech nor have an electrical background. Just thinking of things I would do if it were my amp.
What happens if the guitar is plugged in?
Playing notes - with and without?
Have you tried plugging guitar straight into Effects Return?
Have you tried running Effects Send into another amp?
Honestly - I don't think it is that big of a deal. Maybe I'm missing something though.
Good luck